Protein Info for H281DRAFT_05548 in Paraburkholderia bryophila 376MFSha3.1

Annotation: succinyl-CoA:L-malate CoA transferase subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF02515: CoA_transf_3
  • amino acids 8 to 378 (371 residues), 373.8 bits, E=4.9e-116

Best Hits

Swiss-Prot: 47% identical to SCCT_CHLAA: Succinyl-CoA--D-citramalate CoA-transferase (Caur_2266) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)

KEGG orthology group: K14472, succinyl-CoA:(S)- malate CoA transferase subunit B [EC: 2.8.3.-] (inferred from 53% identity to rru:Rru_A2550)

Predicted SEED Role

"L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)" (EC 2.8.3.16)

MetaCyc Pathways

• oxalate degradation II (1/3 steps found)

KEGG Metabolic Maps

• 1- and 2-Methylnaphthalene degradation
• Geraniol degradation

Isozymes

Compare fitness of predicted isozymes for: 2.8.3.-, 2.8.3.16

Use Curated BLAST to search for 2.8.3.- or 2.8.3.16

Protein Sequence (402 amino acids)

>H281DRAFT_05548 succinyl-CoA:L-malate CoA transferase subunit B (Paraburkholderia bryophila 376MFSha3.1)
MSTTKQALAGIRVLEMATYIAGPFCGTLLAEFGADVIKLEMPNVGDPCRRYGTPTEAEDA
TLMFLSEGRNKRSITADLRREEGADLVKRLVKEVDVVIENFQPGTLEGWGLGWEDLREHN
SKLVMARVTGFGQDGPARNRPGFGRIGVAFGGLGYITGYPDRPPTSPGTATLADYLSGLF
AANGVLTALRARDLHGVGQFIDIGLYESVFRILDEMAPAYAADGKVRERSGPASHHSVPH
SNFPTKDNRWVSIACTNDKIFERFAKAAGRGEAVGPDGKWSKYPDRRADEAAVNEFAVSW
TKSRTRDEILVACEEAQVPCGPIYAIDEIFEDPQYNARGNLLKVQDDRVGEITIPNVVPR
LSETPGFVRSLGPALGASNEEVYQSLGLTVEEIAVLRAANVI