Protein Info for H281DRAFT_05543 in Paraburkholderia bryophila 376MFSha3.1

Annotation: porin, GBP family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13609: Porin_4" amino acids 9 to 351 (343 residues), 162.1 bits, see alignment E=2.9e-51 PF00267: Porin_1" amino acids 51 to 364 (314 residues), 39.3 bits, see alignment E=5.9e-14

Best Hits

KEGG orthology group: K03285, general bacterial porin, GBP family (inferred from 62% identity to bac:BamMC406_0875)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>H281DRAFT_05543 porin, GBP family (Paraburkholderia bryophila 376MFSha3.1)
MKRTNTIVLAVAGLAASAAHAQSSVTLYGVLDEGISYTSNVGGHSVWSISSGNINGSRWG
LRGSEELGSGFKAIFTLENGYNISNGTLGQNGRLFGRQAFVGLSSSQYGSVTMGRQYDGV
VDYLAPLSLTGTASGGTFFAHPYDNDNLDNAIRLNNTIKYSSVNYGGFKFGGMYGFSNST
EFANNRAYSFGASYVFGGLTVATGYLQLNNDVNNFAVAVTSPGTATGTYGFKAGTQRTFG
SGINYSFGSAILGFVYSQTNLSNAAGGGVSAGQSGTHAGISFAGDSARFQNFEGNIRYFV
TPSVLLSGAYTYTRSNLGGGLAPNYNQVSLLADYLLSKRTDLYLIGQYQHVSSNPEVHAY
LNTLSATSSTQTQINVSAGIRHRF