Protein Info for H281DRAFT_05510 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 PF13936: HTH_38" amino acids 2 to 29 (28 residues), 27.8 bits, see alignment (E = 2.5e-10) PF02796: HTH_7" amino acids 2 to 33 (32 residues), 24 bits, see alignment 5.2e-09 PF00665: rve" amino acids 111 to 220 (110 residues), 56.4 bits, see alignment E=4.8e-19

Best Hits

KEGG orthology group: None (inferred from 57% identity to rme:Rmet_1264)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>H281DRAFT_05510 Transposase (Paraburkholderia bryophila 376MFSha3.1)
MQIRILHKQGKSLRAIACEVGCSVNTVRKYLATQDAPTFRPAATPRESILKPFEAYLRER
IASAAPDWIPATVLWREIQSKGFDGGERIVRKFVATLRPVPAPDPLVRFETAAGDQMQVD
WVEFRRRKGANLFAFVATLGYSRATYVEFVSDMRLDTLLRCHVNCFNWFGGVPRRALYDN
MKTVVIERDAYGPKQHRFQPGFLDFARHYGFRPELCRPYRAKTKGKVERMNGYLRRSFYV
PLAAQFKAVNVELDVATANTEVWRWLREVAHVRIHGTTRLKPGEQLLIEQKALQSVPPPY
PALLPATTPASGQELRERFHDWLSPLQHPLSVYDQLIQVAA