Protein Info for H281DRAFT_05509 in Paraburkholderia bryophila 376MFSha3.1

Annotation: DNA replication protein DnaC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 PF01695: IstB_IS21" amino acids 11 to 249 (239 residues), 294.8 bits, see alignment E=9.7e-92 PF00308: Bac_DnaA" amino acids 102 to 202 (101 residues), 35.2 bits, see alignment E=2.5e-12 PF03969: AFG1_ATPase" amino acids 103 to 259 (157 residues), 28.5 bits, see alignment E=1.6e-10 PF00004: AAA" amino acids 104 to 182 (79 residues), 28 bits, see alignment E=5.4e-10

Best Hits

Swiss-Prot: 44% identical to ISTB_PSEAI: Insertion sequence IS21 putative ATP-binding protein (istB) from Pseudomonas aeruginosa

KEGG orthology group: None (inferred from 66% identity to rso:RSp0953)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (272 amino acids)

>H281DRAFT_05509 DNA replication protein DnaC (Paraburkholderia bryophila 376MFSha3.1)
MNIAHERVAQLCAQLKLTTIADALPHLAQKAIADEVNLTEFLESVLKAEHTARLVRQRAT
FARLAGFPTIKTLDGFDFAAASGVPRSQVQELASLTFLERNENVVLLGPSGTGKTHIAMA
LGYAATQAGIKVRFITAADLLMILTTAHRQNQLGDALKRFVNPYRLLIIDEIGYLPMSRE
QANLFFQVIAKRYERGSLIVTSNLPFGQWDQTFADDATLTAAMLDRLLHHAHVVAIQGES
YRLRDKRRAGLVMKRSTTTKENAANGMRSAPQ