Protein Info for H281DRAFT_05449 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 320 to 342 (23 residues), see Phobius details PF08376: NIT" amino acids 68 to 305 (238 residues), 32.3 bits, see alignment E=2e-11 PF00672: HAMP" amino acids 341 to 386 (46 residues), 40.4 bits, see alignment 4.6e-14 PF00015: MCPsignal" amino acids 456 to 611 (156 residues), 172.9 bits, see alignment E=8.4e-55

Best Hits

KEGG orthology group: None (inferred from 97% identity to bge:BC1002_5794)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>H281DRAFT_05449 Methyl-accepting chemotaxis protein (Paraburkholderia bryophila 376MFSha3.1)
MKLLISFIDRLPIARKLLLLGILILPTIGVPTYLQLKSLLNAVSAASTEQAGLESARALQ
SLIQLTLQHRAQAATLLGGNNTVAASREATRAAVDQAIARIHQDLKARTRRPDMMRAWES
AVANWREIAAAVDARKLSDKESTMRHTEIIEQYLSILDLLLDDTGLALDSEVGTHYLVRA
ALVSLPKATATLSLTRSRGAGILARGEASPTERAMLASLANAASDQADDLGKAFDKAFHA
EPELSAALADELDRANTSIRAALDLATREIVSADAIHYAAIDYIKTFTVALDPLFALEAR
ALDSLKAQLDLRSNRVHRAMLVQVGLLGMMLLIAIVLSSIVVRRITGPLRNALALANRVA
DGDLTSHVEVVTTDETGQLMQALKAMNSSLASMVARIRTGAETISTGSAQIAAGNTDLSS
RTEEQAASLEESAANMIQLTSTVRHNTESARQGNTLAAHASEIAARGGEVVGRVVHTMRD
ISNSSTKVANITATIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRAATA
AKEIKGLINESVDHVTAGTEHVDEAGRTINEVVSAVRRLADLMGEIAAASDEQHKGIEQV
NSAVVQMDQVTQQNAALVEQATSAAQSMSEQAVLLKRAVDVFKVSDGYLVAS