Protein Info for H281DRAFT_05442 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Predicted arabinose efflux permease, MFS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 407 to 427 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 27 to 421 (395 residues), 80 bits, see alignment E=1.8e-26 PF07690: MFS_1" amino acids 32 to 381 (350 residues), 98.7 bits, see alignment E=3.3e-32 amino acids 254 to 426 (173 residues), 36.2 bits, see alignment E=3.5e-13

Best Hits

KEGG orthology group: None (inferred from 98% identity to bge:BC1002_5812)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>H281DRAFT_05442 Predicted arabinose efflux permease, MFS family (Paraburkholderia bryophila 376MFSha3.1)
MELSHHPVGAADHSHAAGLSRAQWKMILIASLGGSLEFYDFIVYGFFAHHIAAQFFPNAS
PLISMLAAFSVLAIGYVIRPLGGIVLSSWGDRYGRRPIFLGSIIVVTTATICLGLLPNFQ
SWGITASILLILLRMLQGFCVGGEMPGAITYAVEAAPHRAGLAAGIIIGAVNVGVLLATF
VNLGIQSYLSSADAAAYGWRIAFLFGGLCGLLSYWMRRNLDESPEFKEMHGAVVKQPFRE
TLRHHGKAVVAGALTIAVMAGVNGILYGHMPAYLVQQLHYAPQTAAIAQNAYLVVSSFGL
LAAGWLGDKIARRYLLRTSAALLIVLSYPFYWALVNHTVDPVVLFVLAAVVFSLASGTWP
SVLADQFPVQVRFSGIALAYNISVVVFSGFAPLLATMLVRETGSLAAPAYYVVGACAVAL
LASFALPKASLLPGLSHRDAE