Protein Info for H281DRAFT_05373 in Paraburkholderia bryophila 376MFSha3.1

Annotation: type VI secretion system protein ImpL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1289 signal peptide" amino acids 9 to 13 (5 residues), see Phobius details transmembrane" amino acids 14 to 30 (17 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 443 to 462 (20 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 14 to 567 (554 residues), 457.9 bits, see alignment E=4.5e-141 PF14331: IcmF-related_N" amino acids 191 to 446 (256 residues), 279.5 bits, see alignment E=5e-87 PF06761: IcmF-related" amino acids 495 to 847 (353 residues), 262.3 bits, see alignment E=1.4e-81 PF21070: IcmF_helical" amino acids 1002 to 1090 (89 residues), 41.3 bits, see alignment 2.9e-14 PF06744: IcmF_C" amino acids 1118 to 1221 (104 residues), 88 bits, see alignment E=9e-29

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 95% identity to bpy:Bphyt_4923)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MH46 at UniProt or InterPro

Protein Sequence (1289 amino acids)

>H281DRAFT_05373 type VI secretion system protein ImpL (Paraburkholderia bryophila 376MFSha3.1)
MRRILNVLTHPRTLSIIGLLALAAVLFVGADTLQIDLMWPAIALGVVIALWLLVWAVRRL
RARHANRKLGEMLEQQAEKQSTEAGPAPTPARQAELDVLRTRLVDAVKTIKTSKIGQVSG
GSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKNNAVIHGIGGTRNCDWFFTTEGIL
LDTAGRYSVHEEDRTEWLGFLGLLKRFRPKAPINGIIVTASIAELTSSKPEFAINLAKNL
RQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSGSDRHEYDRVWGATLPYEPDEKRDV
VGLFDEHFEELYDGLKEISVAQMSINRGNKLSPGQLSFPLEFSTIKPALRAFLATLFETN
PFQYKPIFRGFYFTSALQEGETNSSAATRIANRFGLSADSLPKPHSAFSKNGFFLRDLFS
KVIFADRQTVKQFASPAKTRMRYATFFGFVAALALALGGWTWSTIGNQQLAENVKADLDN
VVRLQQNRNDLQSRLQAMDVLEDRIDQLEQFRRDKPLAVSFGLYQGDRLEERLLTEYYNG
VRQILLDPVSQNLASFLKEVNAHPDQLAPLNRTPDAAAIPVSAHTAMAANSQGGLYSDAS
PTNVEDAYNALKTYLMLSDKRHVETAHLTDQVARFWRGWLETNRGNMPRDEMIRSAERMI
TFYLSRVSDDDWPMIDQNLGLVDQTRENLRRVVRGMPARQRVYEEIKARASTRFAPMTIA
RIVGENNTALVAGSYAIPGTFTREAWFQYVQPAIRDAATKELQAKDWVLNTSAHDDLTLE
GSPEQIQKALVTMYKTEYAMHWQKFMQGIAVQSFGSFGQAVDAMNRLGDPQDSPIRKVLE
TAYDQTSWDNPSLFNANLKRAQSGVTSWFKQWFARAPTGQLNANIDINGNPVELPMGPIG
QEFSALGRIVVTGDNGSMLKGYMDTLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGSGSE
LADSLKYVDEQMLTGLTDSQRKALRPLLVRPLMAAYAVVIQPASVEVNKVWNAQVYQTFQ
SSLANKYPFAGDAKVEAGAGEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLTARTWGDMG
LALTPDFTNGFARWVAPLAGGAAGASAGQSSAEPQTVFQILPQPSSGTTEYTLAIDGQQM
RYRNTPPQWTNFVWPNPSGSPGATLNATTFDGRTLQLVNEPGRYGLEKLINSAQRKRRPD
GTFDLSWTQGNVTVAVSMRIISTSQASGSSSDAPQQQSLRGLRLPSSVADVSAAANSVTA
TATNTAAPASPAARPATTATAVSNTGSAQ