Protein Info for H281DRAFT_05364 in Paraburkholderia bryophila 376MFSha3.1

Annotation: type VI secretion system protein ImpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 19 to 491 (473 residues), 726.9 bits, see alignment E=5.8e-223 PF05943: VipB" amino acids 68 to 370 (303 residues), 445.4 bits, see alignment E=9.2e-138 PF18945: VipB_2" amino acids 380 to 490 (111 residues), 156 bits, see alignment E=3.9e-50

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 98% identity to bpy:Bphyt_4914)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MH44 at UniProt or InterPro

Protein Sequence (496 amino acids)

>H281DRAFT_05364 type VI secretion system protein ImpC (Paraburkholderia bryophila 376MFSha3.1)
MNQQTAAAQLATAQSGPESTLLDEIVEKSRVAKSDSEHARAKDLIGELVHQVLDGTVVVS
DNLSATIDARVAELDRLISAQLSAVMHAPEFQRMESTWRGLDYLCKESNTGSTVKIKALH
APKRDLVRDFKTAIEFDQSALFKKIYEEEFGTFGGSPFGAIIGDFEVTRQPEDVYFIEQM
SHVAAAAHAPFIASASPELLGLETFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFNPKDGATAEGFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCA
AIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY
AAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNV
EVFLNRWISQYVLLDDNATQEQKAQFPLREASIQVSEIPGKPGAYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS