Protein Info for H281DRAFT_05325 in Paraburkholderia bryophila 376MFSha3.1

Annotation: TRAP-type C4-dicarboxylate transport system, small permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details PF04290: DctQ" amino acids 24 to 151 (128 residues), 90.6 bits, see alignment E=3.9e-30

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_5696)

Predicted SEED Role

"TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MHG3 at UniProt or InterPro

Protein Sequence (156 amino acids)

>H281DRAFT_05325 TRAP-type C4-dicarboxylate transport system, small permease component (Paraburkholderia bryophila 376MFSha3.1)
MKRPNDFIFRALAVIASLSLAGLSLLVIYSVVMRYVFSDAPDFVEPIALLLVIVIAMFGA
ALKVREGGHIGLDSLVKSLPEKGQLAAHTFQHLCLIALAVAIFFGSLQMAETTLHDKIPI
LGLPEALRYVIPVIASVCIALFSFENLLTLFAKKHK