Protein Info for H281DRAFT_05309 in Paraburkholderia bryophila 376MFSha3.1

Annotation: cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 17 to 41 (25 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details amino acids 221 to 238 (18 residues), see Phobius details amino acids 322 to 346 (25 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 408 to 430 (23 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 10 to 437 (428 residues), 570.3 bits, see alignment E=1e-175

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 97% identity to bug:BC1001_5588)

MetaCyc: 65% identical to cyanide insensitive ubiquinol oxidase subunit I (Pseudomonas putida KT2440)
RXN-6883 [EC: 1.10.3.11]

Predicted SEED Role

"putative Cytochrome bd2, subunit I" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 1.10.3.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MIF6 at UniProt or InterPro

Protein Sequence (470 amino acids)

>H281DRAFT_05309 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (Paraburkholderia bryophila 376MFSha3.1)
MNSAISAFDLARIQFAFTVSFHIVFPALSIGLASFIAVLEWRWLKTGKAYYKDLCLFWSK
IFAVAFGMGVVSGVVMSYQFGTNWSGFSSFAGPVTGPLLMYEVMTAFFLEAGFLGIMLFG
WQRVSPRAHFGATLMVAIGTLISTFWILASNSWMQTPQGFEVVNGRVVPLDWFKIIFNPS
FPYRLAHMALAAFIVAGLVVAAVGAWHLLRGRRDPAVKKMFSMALWLLLVLTPIQAFVGD
QHGLNTREYQPAKIAAIEGLWDTEKGGTALNLFGIPDMQAETTHYAVSIPHLGSLILTHS
WDGEIRGLKEFPPQDRPNSTVVFWSFRIMAGLGVLMIVMSVAAWVLRRRGRLFESKSFQR
VAVAMGPSGFITLLAGWVTTEAGRQPWVVYGVMRTSQAVSPLTAQQVGISLMAFVVVYFL
VFGTGIYYMLKLMRSGPALPGHTPHGVPGQTPNQTARRPFSAADQMIDAA