Protein Info for H281DRAFT_05274 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Uncharacterized protein YcsI, UPF0317 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF07286: D-Glu_cyclase" amino acids 108 to 250 (143 residues), 216.6 bits, see alignment E=6e-69

Best Hits

Swiss-Prot: 93% identical to Y4813_PARPJ: Putative hydro-lyase Bphyt_4813 (Bphyt_4813) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_5553)

Predicted SEED Role

"FIG00464796: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MIC5 at UniProt or InterPro

Protein Sequence (259 amino acids)

>H281DRAFT_05274 Uncharacterized protein YcsI, UPF0317 family (Paraburkholderia bryophila 376MFSha3.1)
MSYTPSEFRQQIRSGRLSGPTAGVCGDYAQANLAILPQQYAADFLRFCTLNPKACPLLGI
GETGQWRVPSLGADLDIRNDVPAFYVYRHGERAEEVHSLNELWRDDLVVFAIGCSFSFEE
MLRREGIGLRHIEQQVNVPMYRTRERNVPAGVFGGNRVVSMRPLKAADAIRAIQITSRFP
AVHGAPVHIGDPSLIGIRDLSRPDFGDAVEVRSDELPVFWACGVTPQAAIESARLPFAIA
HKPGHMLVTDIPNALLAVI