Protein Info for H281DRAFT_05238 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Glycosyltransferases involved in cell wall biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 286 to 306 (21 residues), see Phobius details amino acids 322 to 343 (22 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 12 to 149 (138 residues), 48.8 bits, see alignment E=8.5e-17 PF00535: Glycos_transf_2" amino acids 14 to 165 (152 residues), 79.6 bits, see alignment E=2.7e-26

Best Hits

KEGG orthology group: None (inferred from 80% identity to bug:BC1001_1530)

Predicted SEED Role

"FIG00454099: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>H281DRAFT_05238 Glycosyltransferases involved in cell wall biogenesis (Paraburkholderia bryophila 376MFSha3.1)
MFIPSPSFQSARVSICLPTCNRPELVVECIDSCLAQTYGNVEIVIGDDSTDARTEQLIAS
RYRNERRIRYTRNEPPLGQARNVASLFQRARGDRIMLIHDDDLLATDGVEKLVSLWHLHP
RLDAAFGAQYEADHSGAIDVEASTRLNAAFRRTKDAEGLQPLPGRTGLIQMFPNNGWMAD
ARLVKRIGYKEQYGVCCDFVFGTELCLAAREVFYLHDYVSVYRKTATSISQSTRGTSSAA
TLSAYAFVKMLKLPPQLEPSRKLALRRLAPIVVSVHARNRQARLGFKIALAHLFAYHYGL
SARLYYHLLMLSRAAMSARDRAVAIAASAAPVAPVGSVALVSPVAPVASAALNGETGAVV
RDFVAELAADTTEPG