Protein Info for H281DRAFT_05234 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 PF04293: SpoVR" amino acids 78 to 509 (432 residues), 597.4 bits, see alignment E=6.5e-184

Best Hits

Swiss-Prot: 65% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to bgf:BC1003_1848)

Predicted SEED Role

"FIG004684: SpoVR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MAW8 at UniProt or InterPro

Protein Sequence (571 amino acids)

>H281DRAFT_05234 Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (Paraburkholderia bryophila 376MFSha3.1)
MTDKHLHNEARGYQPERGKGVPQRQSGHAEAAADAVRPVAAGAVDNAEARGHTGTPTEGQ
REVRMNVADRRPLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYA
SVGMPVNYRHWSFGKHFLSTEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIA
HAAYGHNSFFKGNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMN
YGVDRYKRPQKLSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQE
NLLYFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQG
KLEDGFMMEFLHSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTDEDRKWFP
ELAGSPWLPAMHYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSG
YQYVRQALSRQYDMHHREPNIQVWSVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARL
WQFDVYLESVDENGTVRKRYECRYVPPAVRA