Protein Info for H281DRAFT_05198 in Paraburkholderia bryophila 376MFSha3.1

Annotation: RND family efflux transporter, MFP subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 57 to 378 (322 residues), 222.8 bits, see alignment E=2.8e-70 PF16576: HlyD_D23" amino acids 74 to 287 (214 residues), 94.9 bits, see alignment E=6.4e-31 PF13533: Biotin_lipoyl_2" amino acids 74 to 121 (48 residues), 27.6 bits, see alignment 2.9e-10 PF13437: HlyD_3" amino acids 183 to 283 (101 residues), 45.1 bits, see alignment E=2.2e-15

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_1887)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>H281DRAFT_05198 RND family efflux transporter, MFP subunit (Paraburkholderia bryophila 376MFSha3.1)
MREQSHRLARPRPVRRAAFALALALAGVVALNACSKKEAGAPEPRPVVAVAVHVDGNTAP
VTSLPGEVQARYSTPLSFRVGGKIVERRVRLGDVVRNGQVVARLDPADAQKNAASAQAQL
AAAEHSYKYAKQQLDRDQAQAKENLIAPAQLEQTTNAYASAAAQRDQAAQQAALSKDQLQ
YTTLVADHAGVITAEQADTGQNVSAGQAVYNLAWSGEVDVVCDVPESALAGLALGQTANV
TLGALPGRKFTARVRELSPAADPQSRTYRAKLTLDNPGPDVRLGMTADIALSAPAPSSAS
GAQGQHGFIVLPATALFHDGAQPAVWVVRAADSMLELRRVTVVRYNERTIVISQGLKDGE
HVVLQGVHTVSAGEKVRAIAPLHPEDFAS