Protein Info for H281DRAFT_05168 in Paraburkholderia bryophila 376MFSha3.1

Annotation: nucleoside ABC transporter membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details amino acids 220 to 237 (18 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 281 (270 residues), 103.7 bits, see alignment E=4.9e-34

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 99% identity to bug:BC1001_1464)

Predicted SEED Role

"Putative deoxyribose-specific ABC transporter, permease protein" in subsystem Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MDJ4 at UniProt or InterPro

Protein Sequence (309 amino acids)

>H281DRAFT_05168 nucleoside ABC transporter membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MDIQQASALTSSAVTAAIPLMFAGAGELVTEKSGVLNLGVEGMMLMGAVTGYAVTAITGS
PWLGVLAAIGAGLAMSLLFAFLTLTMLANQVATGLSLTIFGIGLSAYVGKPYTSAAVRAT
IDTWTIPGLSKIPVLGPALFSLTPLDYLAFLMFAVIGWFLYRTRAGLVLRSVGESPQVAH
SVGFPVVGVRYGAVAFGGGMAGLAGGYYSIVNLHLWQEQLTSGRGWIALALVVFATWRPG
RLLIGALLFGAVTGLQFYAQAIGVPVPTQFLAMLPYVATVVVLVLISRNPNTIRLNAPAS
LGKPFFSAG