Protein Info for H281DRAFT_05167 in Paraburkholderia bryophila 376MFSha3.1

Annotation: nucleoside ABC transporter membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 322 (34 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 64 to 348 (285 residues), 146.2 bits, see alignment E=5.4e-47

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 98% identity to bug:BC1001_1463)

Predicted SEED Role

"Unspecified monosaccharide ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MDI7 at UniProt or InterPro

Protein Sequence (368 amino acids)

>H281DRAFT_05167 nucleoside ABC transporter membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MILPYRLEARTTPSRTMQLAVPLIAALLTLAIGFVIFGLVGRDPLQAMRAFFIEPLSSVN
GWSELLLKASPLCLIGLGLAIGYRANVWNIGAEGQMLLGGIAASGVAIYFDQATGWWILP
LMMIAGVIGGMLWAAIPALLKSRFNTNEILVSLMLTYVATQLLIYLVSGPWRDPQGMNFP
LSEMFSGDALYPTFYGDWHWKWLRGTRLNASVFVTLIAIPLVWLFMRKSFAGYRMNVGGL
APLAARYAGFSDKKTIWMSLLISGGLAGLAGMGEIAGPIGQLQATWSPGYGFTAIIVVFV
GRLHPVGIVLASLLMALLYLGGEAVQTSMQLPQALSGVFQGLLLFCLLGADLFVNYRVRR
RSVAAQAH