Protein Info for H281DRAFT_05072 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Bacteriophytochrome (light-regulated signal transduction histidine kinase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 182 to 201 (20 residues), see Phobius details PF05227: CHASE3" amino acids 36 to 169 (134 residues), 51.7 bits, see alignment E=1.3e-17 PF00512: HisKA" amino acids 285 to 369 (85 residues), 28.7 bits, see alignment E=1.7e-10 PF02518: HATPase_c" amino acids 412 to 526 (115 residues), 87.7 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: None (inferred from 88% identity to bug:BC1001_1350)

Predicted SEED Role

"FIG00457619: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>H281DRAFT_05072 Bacteriophytochrome (light-regulated signal transduction histidine kinase) (Paraburkholderia bryophila 376MFSha3.1)
MRLTTKGLLLIAIPAVFELALLSGLVKAQSDAAEAERRAAHGQEVMRQTTAILDPVLGES
VALRGAVLAADNRFVTPLSVWVDVDRRIDQLAELVSDNPAQVERVVQVRQAVQAYRQWSD
RTQDMLRSGRRKDVVNRFSELAQADVLDRFRQQLAAFQTEERRLEAQRASDADAARERQQ
TLVVAAVFGSLLFVALSVWLFTRGVRGRLALLSDNAGRLAGNEPLAPIEPGHDEIARLDL
TLHETSRRLLEAERIQARFQADLARRADELSRINESLRQQTQENEMFIYSVSHDLRVPLV
NLQGFSKELIRACEELRAAVSDSSLPAQTRQRIERIVDEDIGEALHYLQTAVLRASHIID
ALLRLSRIGRVEYRQQKVEVCDIVQRVIDAMQGSIRARNAQVHVGELPAVWGDPTALEQV
FANLIGNAVNYLDQSREGRIEIGTTPAPPGVQSLRIFYVRDNGLGIPAIALPRLFNAFQR
LHGTAVAGEGIGLALVRRVVERHGGRVWAESTEGAGTTFYLSLPEAGARSALAAAQVRAG
AHAANDQAMADEQGNLGMGR