Protein Info for H281DRAFT_05005 in Paraburkholderia bryophila 376MFSha3.1

Annotation: type III secretion protein HrpB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 TIGR02561: type III secretion protein HrpB1/HrpK" amino acids 19 to 200 (182 residues), 169.4 bits, see alignment E=3.7e-54 PF09613: HrpB1_HrpK" amino acids 19 to 148 (130 residues), 144.2 bits, see alignment E=8.4e-47

Best Hits

KEGG orthology group: None (inferred from 45% identity to bpd:BURPS668_A1995)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>H281DRAFT_05005 type III secretion protein HrpB1 (Paraburkholderia bryophila 376MFSha3.1)
MLANQPKSAQLSQSVSQADYLKCSQDVISALIETVSVGLFSHFPTVRGDTTDIELVLDAL
RALRPKVSEIESLQGVLYIVHGRWDDAVQVLRDVIHAAPSFSYAKAMFAYCLASKGDPNW
RQWADEALAGDTAPETRSLIRALEVRADLLAARASYRGGEFVLPQSYRELAEEQEAKAAA
EHARSAVQPARENAAQFQQMGFLRA