Protein Info for H281DRAFT_04881 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Predicted arabinose efflux permease, MFS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 343 to 367 (25 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details PF12832: MFS_1_like" amino acids 18 to 376 (359 residues), 61.7 bits, see alignment E=1e-20 PF07690: MFS_1" amino acids 19 to 291 (273 residues), 95.9 bits, see alignment E=3.7e-31 amino acids 252 to 404 (153 residues), 42.8 bits, see alignment E=5.2e-15 PF00083: Sugar_tr" amino acids 251 to 397 (147 residues), 22.3 bits, see alignment E=8.5e-09

Best Hits

KEGG orthology group: None (inferred from 96% identity to bxe:Bxe_A2953)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MCY7 at UniProt or InterPro

Protein Sequence (418 amino acids)

>H281DRAFT_04881 Predicted arabinose efflux permease, MFS family (Paraburkholderia bryophila 376MFSha3.1)
MTGRTLVTARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMALSVGTISAMV
SQVPGGAAVDALRNKKGAAAWAIFAIILSAVLLATSPTVLPVIAAEVFHGFASCMLTPAL
AAISFALVGRANLGDRLGRNARWASIGSAVAAGLMGVFGEYYSPRAVFWLTAGLAVPALF
ALAMIQRTDTIQLPKAAPTPQETERRESLRELLRDRRMLLFAACIVLFHLSNAAMLNLAA
GEVTAGMGDNVQLVIAACIIVPQAIVAMMSPWVGRSAERWGRRPILLLGFSALPIRALLF
AGISSPYLLVPVQMLDGLSAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLST
TAAGFIADHFGNAVAFFGLAAAGALAVLLVWAAMPETRDAAAAEDSAPVADGGGSAVR