Protein Info for H281DRAFT_04852 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 66 to 68 (3 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 186 to 215 (30 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 343 to 365 (23 residues), see Phobius details amino acids 371 to 388 (18 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 60% identity to bxe:Bxe_A4433)

Predicted SEED Role

"FIG00460482: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (610 amino acids)

>H281DRAFT_04852 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MKALLDTFQLLDLNSRKATVRACVTVPVLFAIWSLYLGQDRNWDLMNYHLYNAFSFLNGK
LGVDFAPAGMQTYFNPVLDVFYFGLNEILPAPMVGVLMGYLHGLNFVVLVGIAHEALPDL
PEEDKYRTPLLLAVAGAITANFLSGEGNSMGDDTTAIFILGAALLLLRQWQTMAALTPRS
AGQLVAAGFFAGLAMGLKLTNATYAVALCFALLFVPGSPTTRVRVAFVFGIGVLAGVALT
GGYWMWVLWQKFGNPFFPQFSSIFPHPLTPPVGVSDRSWLPRNLFEYIAWPFVFALDSKR
VGQARLHQIIWPVVYVLFIAFVCCRLSRVLSRRHQTRLSPKARYLLVFVAIGYILWMVVF
SIYRYIVPIEMLAPLIAYLLLTGMFPYATARRVAAFLLAATSAVVLFGGVETWGHERWAL
RAFRADVPVLDKGATLVLVGGNPAWAWLAQFYPVDAAFTQIDGSFPLTPLYDEQIIRMIR
SRNGQAYAVVEGKYNWRAESVANMNDIFQLLGLGRGAQQCDLSERVVRRLHLHARLVWNA
PASRDQVCHLDIRSDDVRDIRKENADLIDAAQSVAERHGLRINATTCTDYRAYIGQGIFP
YQLCRIRPVP