Protein Info for H281DRAFT_04800 in Paraburkholderia bryophila 376MFSha3.1

Annotation: protein SCO1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 30 to 42 (13 residues), see Phobius details PF02630: SCO1-SenC" amino acids 62 to 160 (99 residues), 42.9 bits, see alignment E=2.4e-15

Best Hits

KEGG orthology group: K07152, (no description) (inferred from 64% identity to bge:BC1002_6584)

Predicted SEED Role

"Sco1/SenC/PrrC protein family" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>H281DRAFT_04800 protein SCO1/2 (Paraburkholderia bryophila 376MFSha3.1)
LFDPKALMRAEPGESTPVERSSRRVFLRDAAMLALAAAPLSSYAQHGTSGLVTPPVRLED
TRLVDQTGTERSLNSMLLDGVTAVQTIYTGCSSVCPLQGALFSAVQQRLQQTRGRYPVRL
LSIGIDPLSDSPSALHEWLKRFQAGPAWTAATPTLRDVDGMRMALAGSRLPLGNIADHAT
QIYCFDASARLRWRSADLPRVDEICNALGALGRA