Protein Info for H281DRAFT_04787 in Paraburkholderia bryophila 376MFSha3.1

Annotation: polysaccharide transporter, PST family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 21 to 24 (4 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 87 to 111 (25 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 157 to 188 (32 residues), see Phobius details amino acids 260 to 277 (18 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details amino acids 392 to 409 (18 residues), see Phobius details PF01943: Polysacc_synt" amino acids 20 to 281 (262 residues), 66.2 bits, see alignment E=4.9e-22 PF13440: Polysacc_synt_3" amino acids 42 to 334 (293 residues), 171.4 bits, see alignment E=4e-54 PF14667: Polysacc_synt_C" amino acids 336 to 413 (78 residues), 29.1 bits, see alignment E=1.5e-10

Best Hits

KEGG orthology group: K03328, polysaccharide transporter, PST family (inferred from 95% identity to bug:BC1001_0534)

Predicted SEED Role

"FIG00457308: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MAD4 at UniProt or InterPro

Protein Sequence (417 amino acids)

>H281DRAFT_04787 polysaccharide transporter, PST family (Paraburkholderia bryophila 376MFSha3.1)
LRAIRLPALSIASSFGASAATWVLLQQFAVRGLVAIKFLAIGRMLGPAAIGSVSVALLAV
AIAEALSDTGLAQAVIQGEHAPTRSQLGAVWTTLTARGLLISLLLVALAPLLSSQFHLDG
SLVLIQLAALLPLLRGLASPTYYVVQRERRFQHIAGVEVAAAFVDCSVGLALAYFGAGAA
SVLIGLVAGESLKSVLTWATMTPRPPVRPVWSGIGQYVGFSRWIWASSVINLLLNQFDKV
VVGKLLGPAQLGGYQMSSRLAQMLLADAAIAMSQYLFPTFAAHHRRDPKAASRLIRVYLL
AAAIGLAAFVEVLRLIAEPMFSLILGAAWLPAVPLFRILVINMAVGALIAVLVSYLRAIG
DAKATVHASAIQVVVLLISAPLAVRWWGVTGIAWSMTLGLGCAAAWMLYRTLRARTA