Protein Info for H281DRAFT_04662 in Paraburkholderia bryophila 376MFSha3.1

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 46 to 66 (21 residues), see Phobius details amino acids 94 to 119 (26 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details PF04403: PqiA" amino acids 45 to 196 (152 residues), 153.4 bits, see alignment E=2.2e-49

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 87% identity to bug:BC1001_0412)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M7P8 at UniProt or InterPro

Protein Sequence (259 amino acids)

>H281DRAFT_04662 paraquat-inducible protein A (Paraburkholderia bryophila 376MFSha3.1)
MENDNLIACHECDTLFRKPRLAGRKLARCPRCRATLYSGVSRKLEGISAMTLAALITFLI
AQGFPIVELETNGITSQTTLFGALVALWNEDMQIVAVMVFCSTILFPLTELVALLYVLIP
LRSGYVPAGFNRVLRAIQFVRPWGMIEVFMLGVLITIVKMVSLARVIPEAALFAFGALTL
MFAVVVTFDPRILWDLADELGARSQRPLPRSSADSAALAVGAVAGPPAPPALQVDAEPGV
DRGQAPDASPGVPPAPHRG