Protein Info for H281DRAFT_04659 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF03886: ABC_trans_aux" amino acids 62 to 213 (152 residues), 144 bits, see alignment E=1.6e-46

Best Hits

KEGG orthology group: K09857, hypothetical protein (inferred from 75% identity to bgf:BC1003_0420)

Predicted SEED Role

"ortholog of Bordetella pertussis (BX470248) BP2750"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>H281DRAFT_04659 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MMFARLSRLSRLSRLPGGPARNAFQAGALVAVLALAACASPSSRFYTLGGASVGASGSTP
AGASSVRTAAAPAWLIEVAPIDVPPQVAKTQLVVQTGPTQVKVLEEERWASLPGDELRRA
LSTSLTQQLNTIDVYGTAYSDTTPVYRVSVNVQRFESWPVSHALIDAVWSVRAVRSTAVM
TCRSVVSEQVGSGYDSLVDGHRRALQRVSEQVAGALRAMAAASSASAGAAAAGASASQAK
GAARVNVPACPSDGAAVAAG