Protein Info for H281DRAFT_04547 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Uncharacterized membrane protein YckC, RDD family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 104 to 130 (27 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details PF06271: RDD" amino acids 31 to 177 (147 residues), 78.9 bits, see alignment E=2.4e-26

Best Hits

KEGG orthology group: None (inferred from 81% identity to bug:BC1001_1064)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>H281DRAFT_04547 Uncharacterized membrane protein YckC, RDD family (Paraburkholderia bryophila 376MFSha3.1)
VSEPRVTSGSSSNSNASPSPAKPAGSTDTPPTVRRRLAALLYEALLLFGVVFVAGYLFST
LTQQRNGLTHHNLLAAWIGLVVGLYFVWFWTHSGQTLPMKTWRLRVVAASGAPLSAWRAI
ARYVLAWLWFLPPLALHPLLGLRLPQTLTIAAIWFVLWAATGRFGASRQFLHDRLAGTRV
IDVAH