Protein Info for H281DRAFT_04522 in Paraburkholderia bryophila 376MFSha3.1

Annotation: DNA-binding regulatory protein, YebC/PmpR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 237 (237 residues), 319 bits, see alignment E=1.2e-99 PF20772: TACO1_YebC_N" amino acids 5 to 75 (71 residues), 114.3 bits, see alignment E=3e-37 PF01709: Transcrip_reg" amino acids 82 to 237 (156 residues), 215.8 bits, see alignment E=2.8e-68

Best Hits

Swiss-Prot: 97% identical to Y1185_PARXL: Probable transcriptional regulatory protein Bxeno_A1185 (Bxeno_A1185) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: None (inferred from 100% identity to bug:BC1001_1040)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MCY9 at UniProt or InterPro

Protein Sequence (242 amino acids)

>H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family (Paraburkholderia bryophila 376MFSha3.1)
MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN
MPKDNVNRAIQRGVGGVDGANYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFSKN
GGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMEAALEAGADDVVTNEDGSIEVLCPPNDF
PKVKAALEAAGFKAEVAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAAIA
DE