Protein Info for H281DRAFT_04507 in Paraburkholderia bryophila 376MFSha3.1

Annotation: phenylalanyl-tRNA synthetase beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 811 TIGR00472: phenylalanine--tRNA ligase, beta subunit" amino acids 1 to 810 (810 residues), 771.3 bits, see alignment E=6.1e-236 PF01588: tRNA_bind" amino acids 45 to 151 (107 residues), 80.1 bits, see alignment E=2.6e-26 PF03483: B3_4" amino acids 219 to 391 (173 residues), 219 bits, see alignment E=8.5e-69 PF03484: B5" amino acids 410 to 475 (66 residues), 84.7 bits, see alignment E=1e-27 PF17759: tRNA_synthFbeta" amino acids 478 to 692 (215 residues), 198.5 bits, see alignment E=2.6e-62 PF03147: FDX-ACB" amino acids 708 to 810 (103 residues), 71.7 bits, see alignment E=1.4e-23

Best Hits

Swiss-Prot: 85% identical to SYFB_BURP1: Phenylalanine--tRNA ligase beta subunit (pheT) from Burkholderia pseudomallei (strain 1710b)

KEGG orthology group: K01890, phenylalanyl-tRNA synthetase beta chain [EC: 6.1.1.20] (inferred from 97% identity to bgf:BC1003_2377)

Predicted SEED Role

"Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MES3 at UniProt or InterPro

Protein Sequence (811 amino acids)

>H281DRAFT_04507 phenylalanyl-tRNA synthetase beta subunit (Paraburkholderia bryophila 376MFSha3.1)
MQFPESWLRTFVDPQLTTDELSHALTMAGLEVEDLRPAAPPTSKIVVGQVLEVVKHPDAD
KLNVCQVNAGTGATLNIVCGAPNVAPGIKVPVALVGAQLPPAEEGGAPFEIKLSKLRGVE
SQGMLCSARELKLSEDHSGLLILPEDTPIGQDIRETLNLDDTIFEIKLTPNKADCLSVFG
VARETSAITGAPLRPLEIKPVQVKLDETLPVKISAPDLCGRFSGRVIRGVNARAKSPQWM
VERLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGMDVRWGRKGETLKLLNGNT
VEVDETVGVIADEQHIESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRRYNFST
DAGHRFERGVDYATTVEHIERITQLILDICGGEAGPVDDQVVNVPQREPVKMRVSRANRI
IGIAIGAEEIAQIFTRLGLTFEHEGDTFSVMPPSYRFDIEIEEDLIEEVARIYGFEKIPA
RPPVAKSEMRATNETRRSIHAIRHALAARDYAETVNFSFVDAEWEQDFAGNDKPVRLLNP
IASQLSVMRTTLIGSLIHVLRTNLNRRAADRVRVFEAGRVFLHDPSIKAGELTVEGFAQP
KMIGGLAYGPALEEQWGAPSRTVDYFDVKADVEALLSPAVARFVKAEHPALHPGRSARIE
LNGRAIGWIGELHPRWMQKYDLPNAPILFEVEADALMQRVLPTPSEVSKFPPVRRDIAVV
VDQKIEAQALLDELQKAQSEPACKTVQKVVLFDEFRPKSNTSGGLGAHEKSLAFRVTLQD
TGGTLQDETVDLAIQTLVERLARVYGARLRG