Protein Info for H281DRAFT_04454 in Paraburkholderia bryophila 376MFSha3.1

Annotation: amino acid/amide ABC transporter ATP-binding protein 2, HAAT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 PF00005: ABC_tran" amino acids 20 to 163 (144 residues), 101.9 bits, see alignment E=2.3e-33

Best Hits

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 85% identity to bug:BC1001_2460)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>H281DRAFT_04454 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (Paraburkholderia bryophila 376MFSha3.1)
MTSLLDIRGLNAWYGPSQALHGVNLQIGAGEVLALVGRNGSGRSTLVRSIMGLVHAEGEL
RFAGHSLAGLRTFEIARLGIGYVPEHRDVFPTLSVGENLELGVAPRNRGRTPRFSIDDAY
SLFPVLHERRRTRAGALSGGEQQMLSLARALLGDPDLLLVDEPGEGLAGFVMQQVAQCLR
VLRERGMAMLLIEQRLVIAQDIASRVAVMGHGEIVFDGELNAFLQRPDVMREWLGVG