Protein Info for H281DRAFT_04390 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ATP-binding cassette, subfamily B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 transmembrane" amino acids 65 to 87 (23 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 207 to 226 (20 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details PF00664: ABC_membrane" amino acids 71 to 331 (261 residues), 50.1 bits, see alignment E=3.3e-17 PF00005: ABC_tran" amino acids 401 to 550 (150 residues), 118.6 bits, see alignment E=3.3e-38

Best Hits

KEGG orthology group: None (inferred from 97% identity to bug:BC1001_2517)

Predicted SEED Role

"Transport ATP-binding protein CydCD" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MFP4 at UniProt or InterPro

Protein Sequence (640 amino acids)

>H281DRAFT_04390 ATP-binding cassette, subfamily B (Paraburkholderia bryophila 376MFSha3.1)
MRSIGFAANLFAWPTLCMHTPEPYQPHDQLEHLTIAQRNAQNAKLASYAHRPLAFLFRFI
RRHPLAHATVLCSVIAAVGCALASQYAIKHLIDVLGAGRHHPGPLWGAFAILVGLIAADN
LLWRVGGWVAAHTFVAVTGDLRRDLFQYLSGHSPTYYSEKQPGMLASRITATSNAVYTAE
NTTAWNVLPPCIAVLGAIFMIIAVNPLMAGGLMLCSAILSVVLYKLAGRGSARHHHFATK
AASVDGELVDVISNMGLVRAFGMTFREQQRFGATVKAEMDARQQSLLYLEKLRLLHAVIT
ALLSAGLLGWALVLWDQGKATSGDIVLVSSLGFTILHGTRDLAVALVDVTQHVARLAEAV
RTLLEPHGMPDRDGATELVPQGGRVDFESVTFAYPRRRPILDHFDLHIEPGQRVGLIGKS
GAGKSTVLALLQRFYETQGGSIKIDGQDINTITQDSLRHAIALVPQDISLFHRTVYENIA
YGRPEASREEVLAAAREARCTDFIEAMPEGFDTIVGDRGVKLSGGQRQRIAIARAILKNA
PILLLDEATSALDSASEEAIQKALDRLMVGRTVIAIAHRLSTLNNFDRIIVMSAGKVIDD
GSPEELRLRPGLYRDLLSKQYGKGATLHVGGKKVDEQHVI