Protein Info for H281DRAFT_04281 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 transmembrane" amino acids 332 to 352 (21 residues), see Phobius details PF18071: HMW1C_N" amino acids 2 to 141 (140 residues), 105.5 bits, see alignment E=2.2e-34 PF18254: HMw1_D2" amino acids 146 to 233 (88 residues), 94.7 bits, see alignment E=4.7e-31

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_3016)

Predicted SEED Role

"Putative accessory processing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (612 amino acids)

>H281DRAFT_04281 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MKFSINKFEYLCYRREHEKASRELLQLLSKIDQHYGILMDVDVWAQSNEAQDIMDDHLLA
RLTSAITSLVTDPKFTFSDTGIVRTALFQRWLAAMFAASPFRNADHILRSLGVDEHARNA
IELRNSEVRKFQLFYLPESEVRLDWDALWKLDKTMAASLAMTIMSSRFLGTPSAHQKREL
LLRWLPERLEQIDSIDSLPMGVLHDVYMHCSYADMAAKHDIKKPINALIRRKLESLGITD
VTRTAARVEGEKPVLLVVLEWFSKNHSIYRTHSQTLVAMRDKFHLIGMGYDGRVDDAGKA
VFHEFIPLQGANVWEAARHVRDTSEARNAQQMYMPSVGMFPITMVLACLRVAPLQLMALG
HPATTHGHAMDYVVVEEDYVGDEACFSEKLLKLPSDGMPYRAPAAMLELELPAEKEPSNV
VKIAVAGTTIKLNPGFLHTCAAIAREASVPVEFHFLVGQATGLVFPQVRNLIRRLLGKNA
VVHKHQGYAGYMKVIAGCDMFLNPFPFGNTNGIVDTVWAGLVGVCKTGREVHEHIDEGMF
RRLGFPEWTITKTNDEYKASALRLIENAHERRELGAAMAGPKAIEKLIFHGRPEILGERM
QALWLDELHGAQ