Protein Info for H281DRAFT_04261 in Paraburkholderia bryophila 376MFSha3.1

Annotation: SSU ribosomal protein S9P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF00380: Ribosomal_S9" amino acids 10 to 130 (121 residues), 163.7 bits, see alignment E=1.2e-52

Best Hits

Swiss-Prot: 98% identical to RS9_PARPJ: 30S ribosomal protein S9 (rpsI) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K02996, small subunit ribosomal protein S9 (inferred from 95% identity to bph:Bphy_2563)

MetaCyc: 65% identical to 30S ribosomal subunit protein S9 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S9p (S16e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MFY8 at UniProt or InterPro

Protein Sequence (130 amino acids)

>H281DRAFT_04261 SSU ribosomal protein S9P (Paraburkholderia bryophila 376MFSha3.1)
MIGNWNYGTGRRKSAVARVFIKAGKGEIIVNGKPIADYFSRETSLMIVRQPLELTNHGVT
FDIKVNVNGGGETGQAGAVRHGITRALMDYDATLKPELSKAGFVTRDAREVERKKVGFHK
ARRRKQFSKR