Protein Info for H281DRAFT_04241 in Paraburkholderia bryophila 376MFSha3.1

Annotation: probable rRNA maturation factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF02130: YbeY" amino acids 34 to 146 (113 residues), 112.5 bits, see alignment E=6.5e-37 TIGR00043: rRNA maturation RNase YbeY" amino acids 44 to 146 (103 residues), 113.8 bits, see alignment E=2.1e-37

Best Hits

Swiss-Prot: 95% identical to YBEY_PARXL: Endoribonuclease YbeY (ybeY) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 94% identity to bpy:Bphyt_3331)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5ME46 at UniProt or InterPro

Protein Sequence (153 amino acids)

>H281DRAFT_04241 probable rRNA maturation factor (Paraburkholderia bryophila 376MFSha3.1)
MSRAPKLTLNLQFPAAKAWPEHKALLPRATVANWVKAALFADGELTVRFVDAEEGRTLNR
TYRGKDYSTNVLTFAYAESADDPVTGDLILCCPVVEKEAAEQGKPLLAHYAHLLVHGTLH
AQGYDHEVEEEAEEMEAIETEILGKLGFPDPYR