Protein Info for H281DRAFT_04207 in Paraburkholderia bryophila 376MFSha3.1

Annotation: regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF02631: RecX" amino acids 135 to 244 (110 residues), 94 bits, see alignment E=4.8e-31

Best Hits

KEGG orthology group: K03565, regulatory protein (inferred from 75% identity to bxe:Bxe_A0672)

Predicted SEED Role

"Regulatory protein RecX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>H281DRAFT_04207 regulatory protein (Paraburkholderia bryophila 376MFSha3.1)
VIRKGRPLSDTGRNAGGPRNDENDSVDPSESFDAHDRAAGRGPRRAQFQKPPASPNSADF
SDPFETAGNATATEPTYSRSRDSRRASADAKSGQNEAKKSQRPARSLKGRALGYLSRREY
SRSELARKLKPFVEENDSLDTLLDTLEAENWLSDSRFTESLIHRRSSRMGTSRIVGELKQ
HSVDQTLVEEASAQLRETELARARAVWRKKFGELPQTSAERAKQARFLASRGFSGATIGK
ILKGIDEEWSGE