Protein Info for H281DRAFT_04184 in Paraburkholderia bryophila 376MFSha3.1

Annotation: translation factor SUA5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 23 to 222 (200 residues), 167 bits, see alignment E=1.5e-53 PF01300: Sua5_yciO_yrdC" amino acids 31 to 211 (181 residues), 184.7 bits, see alignment E=1.2e-58 PF03481: Sua5_C" amino acids 213 to 346 (134 residues), 84.7 bits, see alignment E=9e-28

Best Hits

KEGG orthology group: K07566, putative translation factor (inferred from 91% identity to bug:BC1001_2919)

Predicted SEED Role

"TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5ME54 at UniProt or InterPro

Protein Sequence (354 amino acids)

>H281DRAFT_04184 translation factor SUA5 (Paraburkholderia bryophila 376MFSha3.1)
MPDQQQPAQPGADAANALPVSVAQIEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVAR
IYAAKGRPANHPVIVHLAPQGDPHYWVEHLPQEAQRLIDAFWPGPLTLILKRAARIPSAV
SGGQDSVGLRCPSHPVAQALLQAFSALRDGHGGVAAPSANRFGHVSPTTAQHVREEFGSA
IHVLDGGASDVGIESTIVDLSRGFPALLRPGRVTPQDIADVLGEAPRLPDGSDATAPRAS
GTLKAHYAPRTPLALLSFTALEPVLAAREPGERVALVARASRAGHWADAEGVHFIAAPED
PHVYARELYGLLRALDRADVTRILIEKLPDTIEWIAVNDRLGRAAAAFEAQSHA