Protein Info for H281DRAFT_04151 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF02311: AraC_binding" amino acids 22 to 101 (80 residues), 25.7 bits, see alignment E=1.3e-09 PF12833: HTH_18" amino acids 203 to 281 (79 residues), 83.4 bits, see alignment E=1.8e-27 PF00165: HTH_AraC" amino acids 244 to 281 (38 residues), 29.1 bits, see alignment 1.3e-10

Best Hits

KEGG orthology group: None (inferred from 97% identity to bgf:BC1003_2822)

Predicted SEED Role

"Transcriptional regulator of various polyols utilization, AraC family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MDR2 at UniProt or InterPro

Protein Sequence (326 amino acids)

>H281DRAFT_04151 transcriptional regulator, AraC family (Paraburkholderia bryophila 376MFSha3.1)
VQPDLEIVAVRRDESFKVWSHGYPYRTVRWHFHPEYEIHLIVATTGKMFVGDHISSFAPG
NLVLMGPNLPHNWVSDVPEGESIAQRNLVVQFGQEFVSSCLESFPEWRQVEALLADSRRG
VSFGARTSAAIQPLFLELLAARGLRRLVLFMSMLEILMGAEDRETLASPAYQADSTGFAS
TRINHVLSYIGKNLANELRESDLAQLAGQSVSAFSRYFRRHTGLPFVQYVNRMRINLACQ
LLTDSELSVTDICFKAGFNNLSNFNRQFLAVKGMAPSRFRRYQQLNDASRDASEEAAARG
AGIDDAPAIVLAPGLPRPAASAYPPT