Protein Info for H281DRAFT_04066 in Paraburkholderia bryophila 376MFSha3.1

Annotation: DNA replication and repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF20582: UPF0758_N" amino acids 35 to 109 (75 residues), 69.6 bits, see alignment E=2e-23 TIGR00608: DNA repair protein RadC" amino acids 41 to 253 (213 residues), 219.7 bits, see alignment E=2e-69 PF04002: RadC" amino acids 133 to 252 (120 residues), 139.7 bits, see alignment E=4.6e-45

Best Hits

Swiss-Prot: 81% identical to Y3578_PARXL: UPF0758 protein Bxeno_A3578 (Bxeno_A3578) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 91% identity to bug:BC1001_2794)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>H281DRAFT_04066 DNA replication and repair protein RadC (Paraburkholderia bryophila 376MFSha3.1)
MSDYASTIDEPMLDFARSPRGAPAPTADGLRRRRKWPKRDMPRERLIDQGPGVLSDTEMI
VLVLGSGLPGHDVFSVARELLDRFGSLRAMLDATYTDFDGLRGIGPAKKAQLLAIMEMAR
RSLVDKMRRRSLMNSPEAVENYLRLLIGGRPHEVFVSLFLDARHRLIRSEESARGTLTRM
AVYPREIVRRALTLNAASLIVAHNHPSGAVRPSASDCSLTRALREALALIDVQLVDHLVI
GSDSVYSFARDGWP