Protein Info for H281DRAFT_03933 in Paraburkholderia bryophila 376MFSha3.1

Annotation: outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01844: type I secretion outer membrane protein, TolC family" amino acids 24 to 431 (408 residues), 236.3 bits, see alignment E=3.3e-74 PF02321: OEP" amino acids 28 to 212 (185 residues), 86 bits, see alignment E=1.5e-28 amino acids 237 to 418 (182 residues), 87.2 bits, see alignment E=6.4e-29

Best Hits

KEGG orthology group: None (inferred from 79% identity to bgf:BC1003_2612)

Predicted SEED Role

"FIG00461106: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (511 amino acids)

>H281DRAFT_03933 outer membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MNKRTIASALLMFSSVVYAEAAEAVDLLTVVEQSTDHDADLAAFRAGSRAAGEALPKARA
ALLPQVAAGWGRAYNSTVTEGVPNTHYWQNGWTVALTQPVFDWSRWTTYKQADFVQARGA
VDLARAQQSAILRAVQTYFDELAAEDELTRADDYTAALDVHLEELRRRRRAGEATVIDVQ
EAEAACQQARSQQLDARDDLQLKRLALEHLTGQRFAGLSRLSDAAVMPGLYPEDMESWAS
QAEAHDYTVQLRQIDRRIAELEVEKARAARLPVVNLTASHTPAGAASGYVRPTTTTTAML
SMSIPIFEGGATSANIDEKLALEDRAQDELVAATRSAGASAREYWSRFLAGVARVEALSR
LVQSSRAALNATKVGYRVGSRGSADVLRASDAFFANRRDLIRARYATVVGLLQLKAATAS
LDLDEVARVNELVLNVRDRQPATRVDVQHAVVDAKVERVAVEAKIETAAAGNEMPLAVVG
TQPPQSVAGTDPQPAAIDAAVQRALGSIRQQ