Protein Info for H281DRAFT_03879 in Paraburkholderia bryophila 376MFSha3.1

Annotation: xylose ABC transporter membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 90 to 106 (17 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 349 to 362 (14 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 61 to 205 (145 residues), 59.7 bits, see alignment E=1.3e-20 amino acids 230 to 388 (159 residues), 94.4 bits, see alignment E=3.4e-31

Best Hits

Swiss-Prot: 55% identical to XYLH_HAEIN: Xylose transport system permease protein XylH (xylH) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K10544, D-xylose transport system permease protein (inferred from 96% identity to bug:BC1001_5068)

Predicted SEED Role

"Xylose ABC transporter, permease protein XylH" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MLY0 at UniProt or InterPro

Protein Sequence (399 amino acids)

>H281DRAFT_03879 xylose ABC transporter membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MTPDVTSQRADDTVPRGAFGGSQRIQQLFARYKILALLIAVAAIWIFFSVLTHGAFVTPR
NLSNLLRQMSITGMLACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPIGVTLPV
VMLLGVLVGVFNGWWSTYRRVPSFIVGLGGMLAYRGILLGVTGGSTIAPVSDGFVFVGQG
YLPTLAGDTLAVVLFVLLAFLTLRQRRNRERYQLSVVPVWQDVAKVIGAGVILAGFVATL
DRYGGIPVPVLLLLALLGIFTWIATQTVFGRRIYAVGSNLEATRLSGVNTNRVKLAIFAL
MGLMCAFAGIVNTARLAAGSPSAGSMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMA
SLDNGMSMLDVDAYWQMIVKGSILVLAVWIDVVSGSNRR