Protein Info for H281DRAFT_03878 in Paraburkholderia bryophila 376MFSha3.1

Annotation: xylose ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 TIGR02633: D-xylose ABC transporter, ATP-binding protein" amino acids 5 to 504 (500 residues), 902.8 bits, see alignment E=2.6e-276 PF00005: ABC_tran" amino acids 21 to 173 (153 residues), 108.3 bits, see alignment E=5e-35 amino acids 281 to 435 (155 residues), 80.4 bits, see alignment E=2.1e-26

Best Hits

Swiss-Prot: 95% identical to XYLG_PARXL: Xylose import ATP-binding protein XylG (xylG) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K10545, D-xylose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 98% identity to bug:BC1001_5067)

Predicted SEED Role

"D-xylose transport ATP-binding protein XylG" in subsystem Xylose utilization

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MM39 at UniProt or InterPro

Protein Sequence (519 amino acids)

>H281DRAFT_03878 xylose ABC transporter ATP-binding protein (Paraburkholderia bryophila 376MFSha3.1)
MTQPLLTMRGIVKAFSGVKALDGIDLTVSPGECVGLCGENGAGKSTLMKVLSGVYPHGTW
DGEITWEGKPLKATSIRDTERAGIIIIHQELMLVPELSVAENIFLGNEITLPGGRMNYAA
MYQRADELLRELGISGINAAQPVMNYGGGHQQLIEIAKALNKQAKLLILDEPSSSLTSSE
IAILLDIVRDLKRRGVACVYISHKLDEVAAVCDTISVIRDGRHVATEPMHALTTDRIISL
MVGREIKNLFPREPHPIGDVIFEARNVTCFDVTNPRRKRVSDVSFELRRGEILGVAGLVG
AGRTELMQAIFGAYPGVSEATVVMEGKTVKIRAPIDAIRAGIGMVPEDRKRHGIVPGLSV
GHNITLAVLQRFSSGGRIDSAAELDTIHTEMKRLSVRAAHPMLSIASLSGGNQQKAVLTR
MLLTDPKVLILDEPTRGVDVGAKFEIYKLIFQLAQRGMSIVMVSSELPEVLGISDRVLVI
GEGELRGDFVNDGLTQEDILSAAIRPVQRVPNPTAASAA