Protein Info for H281DRAFT_03826 in Paraburkholderia bryophila 376MFSha3.1

Annotation: uronate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF04321: RmlD_sub_bind
  • amino acids 18 to 166 (149 residues), 30.2 bits, E=7.6e-11
• PF01370: Epimerase
  • amino acids 20 to 178 (159 residues), 78.2 bits, E=2.1e-25
• PF01073: 3Beta_HSD
  • amino acids 21 to 140 (120 residues), 44.6 bits, E=3e-15
• PF13460: NAD_binding_10
  • amino acids 23 to 127 (105 residues), 32.6 bits, E=2.3e-11
• PF16363: GDP_Man_Dehyd
  • amino acids 60 to 176 (117 residues), 49.4 bits, E=1.5e-16
• PF07993: NAD_binding_4
  • amino acids 68 to 198 (131 residues), 31.9 bits, E=2.3e-11

Best Hits

Swiss-Prot: 54% identical to URODH_PSESM: Uronate dehydrogenase (udh) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: None (inferred from 82% identity to bmu:Bmul_5164)

MetaCyc: 54% identical to uronic acid dehydrogenase subunit (Pseudomonas syringae)
Uronate dehydrogenase. [EC: 1.1.1.203]; 1.1.1.203 [EC: 1.1.1.203]

Predicted SEED Role

"UDP-glucose 4-epimerase (EC 5.1.3.2)" in subsystem Lacto-N-Biose I and Galacto-N-Biose Metabolic Pathway or Lactose and Galactose Uptake and Utilization or N-linked Glycosylation in Bacteria or Rhamnose containing glycans or linker unit-arabinogalactan synthesis (EC 5.1.3.2)

MetaCyc Pathways

• colanic acid building blocks biosynthesis (11/11 steps found)
• D-galacturonate degradation III (2/2 steps found)
• D-glucuronate degradation III (2/2 steps found)
• D-galacturonate degradation II (4/5 steps found)
• D-glucuronate degradation II (4/5 steps found)
• UDP-α-D-galactose biosynthesis (1/1 steps found)
• UDP-N-acetyl-D-galactosamine biosynthesis I (1/1 steps found)
• UDP-N-acetyl-D-galactosamine biosynthesis II (5/7 steps found)
• superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis (4/6 steps found)
• UDP-α-D-galactofuranose biosynthesis (1/2 steps found)
• D-galactose degradation I (Leloir pathway) (3/5 steps found)
• D-galactose detoxification (1/3 steps found)
• superpathway of microbial D-galacturonate and D-glucuronate degradation (20/31 steps found)
• stachyose degradation (2/7 steps found)
• UDP-sugars interconversion (3/9 steps found)
• teichuronic acid biosynthesis (B. subtilis 168) (2/9 steps found)
• superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis (12/33 steps found)
• mycolyl-arabinogalactan-peptidoglycan complex biosynthesis (1/18 steps found)

KEGG Metabolic Maps

• Galactose metabolism
• Nucleotide sugars metabolism

Isozymes

Compare fitness of predicted isozymes for: 5.1.3.2

Use Curated BLAST to search for 1.1.1.203 or 5.1.3.2

Protein Sequence (283 amino acids)

>H281DRAFT_03826 uronate dehydrogenase (Paraburkholderia bryophila 376MFSha3.1)
MSQTMTQPDAAPRKPFRRLLLTGAAGNLGRQLRGVLAQWADVVRVTDIASLGEPAPHEEA
SVVDLADREAVMQLVEGVDAIVHLGGISIDAPFDDLLGANIAGTYNLYEAARKHGVKRIA
FASSNHVIGFHPVTEVLDADAPQRPDTLYGVTKCFGEALSRYYYDRFGIETVCMRIGSSF
DEPKNSRMLVTYLSYRDFIELVRCSLFTNRVGHVVVYGASDNPVKWWDNTKVSFLGFNPR
DSSAPFAARFPATAPDASRDDPAQRFQGGPFVLGEPLERENSR