Protein Info for H281DRAFT_03791 in Paraburkholderia bryophila 376MFSha3.1

Annotation: circadian clock protein KaiC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 PF06745: ATPase" amino acids 14 to 230 (217 residues), 86.9 bits, see alignment E=4.9e-28 amino acids 251 to 468 (218 residues), 111.6 bits, see alignment E=1.4e-35

Best Hits

KEGG orthology group: K08482, circadian clock protein KaiC (inferred from 90% identity to bug:BC1001_4579)

Predicted SEED Role

"Circadian clock protein KaiC" in subsystem Cyanobacterial Circadian Clock

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MLV0 at UniProt or InterPro

Protein Sequence (490 amino acids)

>H281DRAFT_03791 circadian clock protein KaiC (Paraburkholderia bryophila 376MFSha3.1)
MTIHESQTSLRANVDTGVPGLDEILGGGLVRGGVYLLEGMAGAGKTILSSQIGFHRVSRG
EKVLYMTLIAESHDKLLAHLKRLTFFDENAVAQQMLFVSGYHELMQDGLDGFLKLIASSI
YDYRPSLMIIDGFRSAREFSETELSLSKFIHELNALAAAMDCTTLLLAPLSGNEPHPEHT
LVDGLIELNRFSDGMRRAREIEVHKLRARNHLMGKHYFRIAESGLLMYPRLESQCAPSSG
PVDLKTRISFGLPHLDIMFGGGLSQGSTTTLIGPSGVGKTMLCLQFLAAGVANGERCLYL
GSYEGPQRLLGKAEAVSIPLNDAYQDGRLAIQWQPAIELAVDEIAANALATAREIGATRM
VIDGVEGFRDSALRVERFGLFLNALLHQLREAGITALITEEMPLYPDHGNSRSSRVSALT
ENLVLLRYAETEAGLRRAISIVKQRESAHDPSTHELVISSHGLDVIESPFSAAVSSTTGL
SATLQSRRPA