Protein Info for H281DRAFT_03761 in Paraburkholderia bryophila 376MFSha3.1

Annotation: tripartite ATP-independent transporter solute receptor, DctP family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 41 to 294 (254 residues), 234.1 bits, see alignment E=8.9e-74 PF03480: DctP" amino acids 42 to 312 (271 residues), 238.1 bits, see alignment E=6.4e-75

Best Hits

KEGG orthology group: None (inferred from 96% identity to bpy:Bphyt_7227)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MNK0 at UniProt or InterPro

Protein Sequence (341 amino acids)

>H281DRAFT_03761 tripartite ATP-independent transporter solute receptor, DctP family (Paraburkholderia bryophila 376MFSha3.1)
MTNLARRALLRAAAAAPVAGALGFPAIVRAASGPEFVFKYGNNLPLTHPLNVRAQEAANQ
IREASKGRMEIRIFPNNQLGGDTDMLAQVRSGGIEMFTPSALVVSTLAPSVAINAVGFAF
NDYNQVWAAMDGKLGAYVRAAMQKAGLESFEKMWDNGFRQTTTSNGPITSAQNMRGLKIR
VPVSPLSIDMFKGLGAAPTSLQFSEVYSSLQTHIVDAQENPLPIVQVAKLYEVQKYCSLT
NHMWDGYWFVLNPRAWQRLPKDLQGIASDAFNQCALKQREDVRKLNDAAVADLQSKGLAI
NRPAPDSFRAALRQAGFYAQWKDKFGNQAWDLLEQSVGKLA