Protein Info for H281DRAFT_03733 in Paraburkholderia bryophila 376MFSha3.1

Annotation: carbohydrate ABC transporter ATP-binding protein, CUT1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF00005: ABC_tran" amino acids 25 to 168 (144 residues), 77.1 bits, see alignment E=3.3e-25 PF17912: OB_MalK" amino acids 242 to 293 (52 residues), 33.4 bits, see alignment 1e-11 PF08402: TOBE_2" amino acids 288 to 337 (50 residues), 22.6 bits, see alignment 1.4e-08

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_4861)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MN88 at UniProt or InterPro

Protein Sequence (374 amino acids)

>H281DRAFT_03733 carbohydrate ABC transporter ATP-binding protein, CUT1 family (Paraburkholderia bryophila 376MFSha3.1)
MARIEFQNLAHAYRPNPATLDDYALQPMSMVWEDGGAYALLGPSGCGKTTLLNIVSGLVK
PSEGKVLFDGRDVTALGARERNIAQVFQFPVIYDTMSVFDNLAFPLRNRKIPAAEVRNRV
HEVADILDMTRDLPHKASNLAADAKQKISLGRGLVRQDVAAILFDEPLTVIDPAMKWMLR
RQLKKIHQQLKLTLIYVTHDQVEALTFADEVVVMTNGRVVQKGGADALFLRPDHAFVGYF
IGSPGMNLCPIELDAEGARIGAQRLALDTDTLATLRHAHEHANGSLTLGIRPEFVRLAQE
GEAGAVKAQVLRAQQLGNYQLVTAQCDGHLFNAKLEPHVRVVDGPAWLRLAAPETVFFCN
DERIDARISEGAAR