Protein Info for H281DRAFT_03613 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details amino acids 455 to 475 (21 residues), see Phobius details amino acids 717 to 736 (20 residues), see Phobius details amino acids 747 to 767 (21 residues), see Phobius details amino acids 773 to 794 (22 residues), see Phobius details amino acids 806 to 826 (21 residues), see Phobius details amino acids 838 to 858 (21 residues), see Phobius details TIGR03480: hopanoid biosynthesis associated RND transporter like protein HpnN" amino acids 6 to 862 (857 residues), 1078.2 bits, see alignment E=0 PF03176: MMPL" amino acids 88 to 427 (340 residues), 73.2 bits, see alignment E=9.5e-25 amino acids 635 to 858 (224 residues), 32.5 bits, see alignment E=2.4e-12

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 97% identity to bug:BC1001_4756)

Predicted SEED Role

"Hopanoid-associated RND transporter, HpnN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MML4 at UniProt or InterPro

Protein Sequence (871 amino acids)

>H281DRAFT_03613 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MLKSSIVRLVAYSVRHPLRIIALSIVLAVLSGIYVAHHFKINTDISRLIETDKEWSTLEH
AMDQAFPDRGETVLVVVEARAPEFADAAANALTAALKAEPKEFVAVSQPAGGPFFEHNGL
LFPSTEEVMSTTSQLVQSRPLVNTLAHDPSLTGLAGTLTTSLLLPLQIGQVKLSDMSRLL
SQSANTLDLVLAGKPAAFSWRAFVDKSAATNPARAFVVVQPVVNYDALEPGATASQAIRD
TAASLHLDSRYGATVRLTGEQPLADEEFASVKDGAVLNGIGTFVVVLIILWLALRSGRMI
AAVFITLFVGLAITAALGLMMVGALNMISVAFMVLFVGLGVDFGVQFGVKYREERNRDDR
LSAALAHTAHSIGVPLTLAAVAVALSFFSFLPTAYRGVSELGEIAGVGMFVAYLTNMTLL
PALLKIFNPPGEAASPGFKQLAPVDDFLAHHRKPVLIGTLIVVIGATPLLTRLHFDFNPL
HLKDPHTESMATLLSLKDSPEAAVNNVHVLAPSLADADRMAERLRALPEVGRVTTLDTFV
PAQQQQKMMLIASAAQQLLPALQQQPAPQATDAVRVAALKRASNQLSLAAEDHPGPGAAE
AQHLSVTLQKLAAADSATRDRAEHAMSEPLRIALKQLENLLQPTEITRDNLPKEISKGWV
SKDGRALVDIAPKVKPGADPNDDATLARFAHAVKKAEPGAIGGPISILHSADTIIKAFLQ
AACWALLSIAILLWVALRRVGDMLRTLVPLLVSALVTLELCVVFGMPLNFANIIALPLML
GVGVAFKIYFVMAWRNGQTGLLQSSLTHAVLFSAATTATAFGSLWLSHHPGTSSMGRLLA
LSLFCTLIGAVVFQPVLMGKPRPRRAKHKGI