Protein Info for H281DRAFT_03604 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 760 transmembrane" amino acids 37 to 59 (23 residues), see Phobius details amino acids 296 to 306 (11 residues), see Phobius details amino acids 313 to 339 (27 residues), see Phobius details amino acids 375 to 394 (20 residues), see Phobius details PF02518: HATPase_c" amino acids 480 to 597 (118 residues), 56.3 bits, see alignment E=4.2e-19 PF00072: Response_reg" amino acids 622 to 739 (118 residues), 48.8 bits, see alignment E=7.2e-17

Best Hits

KEGG orthology group: None (inferred from 90% identity to bgf:BC1003_4529)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (760 amino acids)

>H281DRAFT_03604 Signal transduction histidine kinase (Paraburkholderia bryophila 376MFSha3.1)
MTQNRFDPHRASRLSADGQDEAVFPAVPEQNFQIRRMTLIALLVAAIVLPCLYVAIMAFS
DLRTREADATNMTLRTVRVAEEHALKVFDMNETLDTRIVDLTEGLDDDGIRAREAAIHRK
VRTMGGGYPQVAAVSIFGRDGALLVSSRVYPAPPVSIGEREDFVGLRDGHDLEHVSKVMT
GHVAGEQVFNTGVERRAPDGTFAGVVSVALRPSYFDAFYRELLGGNDGAPMTMSLVRSDG
AVLAHYPRRPREPAAVAPDSPFAEAMNQGRRAGVARMRSNLDGDNMIVAFRHVGSYPVYV
MCGYRASAMWAAWYRHLAVLILSIFTPSVALWCVIWLSLRRLSAEEEAWERWQAEASMRR
SIESAYRQSRKMEALGTLVGSVAHDFNNLLMILAANVQIARRRGAPGLDRELSAMERALK
SGQSLTRQLLGVARKQPLRNETVALERWLPACRDLLRASLGAKVSLVMDIGAGVWPMRVD
VAELELALINIAVNARDAMPNGGRFTVRATNITFRHEDGFPLTGDFVQVSLEDTGAGMAP
EVLARAFEPLFTTKAKGMGTGLGLPQVFAFCERSGGLAAIDSAVGAGTSVRLYLPRASEE
SAVDTPDETDAEHQGALHGLRILLVEDNEEVAAGTEALLQMMGHQVTCVFNADMALRLLR
DAYTQRARTGEPVPFELVLSDIHMPGALNGIDLAEAIRTLDVTLPVILVTGYAEELDRAR
HVNVRVLSKPFDIALLESLLQGIQRELAQTGLDPATHHAQ