Protein Info for H281DRAFT_03588 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, XRE family with cupin sensor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13560: HTH_31" amino acids 31 to 87 (57 residues), 39.1 bits, see alignment E=1.9e-13 PF12844: HTH_19" amino acids 32 to 90 (59 residues), 35 bits, see alignment E=2.9e-12 PF13443: HTH_26" amino acids 35 to 90 (56 residues), 29 bits, see alignment E=2.7e-10 PF01381: HTH_3" amino acids 35 to 88 (54 residues), 52.6 bits, see alignment E=9.7e-18 PF07883: Cupin_2" amino acids 136 to 204 (69 residues), 35 bits, see alignment E=2.4e-12

Best Hits

KEGG orthology group: None (inferred from 93% identity to bpy:Bphyt_7005)

Predicted SEED Role

"Predicted transcriptional regulators"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>H281DRAFT_03588 transcriptional regulator, XRE family with cupin sensor (Paraburkholderia bryophila 376MFSha3.1)
MASSGNRRAAAGAASAPHAVAAPAIAAPPRVGEQIQRLRAERRMTLDDLSRAAGVSKSML
SEIERDKANPTIAVAWRLTNALGVSLDSLFAPQKTPEAIAVAGPHEIPTLSGHDAKYQLR
VWGPIELAGKFEWYELTLQPGGALVSNAHEPGTREHLTVLQGSIEIEAAGTARRLKAADT
ARYVADEPHAIRNVGKGEAKALLVVIHG