Protein Info for H281DRAFT_03312 in Paraburkholderia bryophila 376MFSha3.1

Annotation: PAS domain S-box-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 PF00989: PAS" amino acids 26 to 126 (101 residues), 37.9 bits, see alignment E=5.5e-13 amino acids 142 to 252 (111 residues), 36 bits, see alignment E=2.2e-12 TIGR00229: PAS domain S-box protein" amino acids 26 to 132 (107 residues), 57.5 bits, see alignment E=7.7e-20 amino acids 138 to 261 (124 residues), 70.5 bits, see alignment E=6.9e-24 PF13426: PAS_9" amino acids 27 to 128 (102 residues), 46.5 bits, see alignment E=1.4e-15 amino acids 154 to 255 (102 residues), 49.1 bits, see alignment E=2e-16 PF08448: PAS_4" amino acids 28 to 130 (103 residues), 35.4 bits, see alignment E=3.8e-12 amino acids 154 to 256 (103 residues), 27.7 bits, see alignment E=9.9e-10 PF02518: HATPase_c" amino acids 386 to 506 (121 residues), 71.7 bits, see alignment E=2.4e-23 PF00072: Response_reg" amino acids 531 to 642 (112 residues), 40.5 bits, see alignment E=1e-13 amino acids 672 to 776 (105 residues), 55 bits, see alignment E=3e-18

Best Hits

KEGG orthology group: None (inferred from 90% identity to bug:BC1001_5389)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (782 amino acids)

>H281DRAFT_03312 PAS domain S-box-containing protein (Paraburkholderia bryophila 376MFSha3.1)
MAHAYEPDDIVQNWANIWVQSLRDYAVIGLSEDGRIRSWNAGGEAIHGFREDEVVGKPLD
IFYTAEERAKGSPQRALDTARSEGRFESEGWRLRKDGKAFWASVVLTALRSQDGTLLGYG
EIVRDMTDKKTVHDAVLESERRFRLLVDGVTDYAIFMLSPEGMVTNWNSGARRIKGYTAS
EIIGSHFSRFYTPEDAGSGLPQRGLAAAARDGRFEAEGWRVRKDGSRFWAHVVIDAIRDG
GALVGFAKITRDITERMEANRLLEETRIALVQSQKMEAIGKLTGGVAHDFNNVMQILRGN
LELLESRHKRDGWTRERLDKAIDAVERGAKLASQLLAFGRQQPLRPIVINLAAAIRGMDD
LLRRALGETVEIETVVSGGLWNTLVDVHQMENVILNLAINARDAMKEGGKLTMEVSNAML
DDQYVAGFPDVPSGQYVMLAVTDTGTGMAPDIVQRAFDPFFTTKPEGEGTGLGLSMAYGF
VKQSGGHIRIYSEVGHGTTVKIYLPRSMEEAVEAPTSPPVTLALLGGTETILVVEDDQEV
QSTVVDTLSGLGYSVLKANDAEQALAVVRSGVHIDLLFTDVVMPGPLRSPAMVAQAVQLL
PRMKVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREQLAYKIRQILGVPPLARNDDTGEN
QEGAADKGLRLLLVDDDLDTSEAIGELLKLLGHDPAVTGSPQEALQLLAEQPFDVLITDL
SMPVMSGLELAQRATQIRPTLRVIFASGHEMPSVDKLPFRWGALRKPYSMDELGAMLRGF
DK