Protein Info for H281DRAFT_03307 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Cytochrome c oxidase assembly factor CtaG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 65 (20 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 229 to 256 (28 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 62 to 301 (240 residues), 215.4 bits, see alignment E=3.9e-68

Best Hits

KEGG orthology group: None (inferred from 83% identity to bug:BC1001_5384)

Predicted SEED Role

"FIG00457288: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>H281DRAFT_03307 Cytochrome c oxidase assembly factor CtaG (Paraburkholderia bryophila 376MFSha3.1)
MAYFPLRAMNKSMRRALAFAALCIPPGVHAHVLTAAERSAPPVLRWTFEPWVVALLVVSL
GLYAAGYRRLRARSRRGRGIRTRQLCAFVAGWLALVAALNSPLDALSAALFSAHMVQHEL
MMIVAAPLLVLGRPLAVWLWAFPPAARHAIAAAVRTPVLYGLWHALCAPTVAWLLHAAAL
WAWHMPRFFEAALASAAIHTLQHASFLLSALLFWWVVFGEGARRDQSGYAMLSLFTTMVH
TGALGALLTLAPGLWYPAYIESTSALGFDPLQDQQLGGLVMWVPGGLAYLIAALLTGARW
LMHRAPVTLMPNTLAARRDTTS