Protein Info for H281DRAFT_03288 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ATP-binding cassette, subfamily B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 895 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 141 to 167 (27 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 33 to 304 (272 residues), 101.7 bits, see alignment E=9e-33 PF00005: ABC_tran" amino acids 369 to 518 (150 residues), 120.8 bits, see alignment E=1.1e-38 PF00072: Response_reg" amino acids 762 to 883 (122 residues), 62.1 bits, see alignment E=8e-21

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_5363)

Predicted SEED Role

"Probable ABC transport protein, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MP00 at UniProt or InterPro

Protein Sequence (895 amino acids)

>H281DRAFT_03288 ATP-binding cassette, subfamily B (Paraburkholderia bryophila 376MFSha3.1)
MPNSATLPRSQLTRRIAADLMRAVWRYRNQTVAALLLMVAAKLSTVLIPLVLKHVVDELG
HPVAQALFPVFLVLAYALLRFLGDALNEARDVVFSIVTQRTVAAFTERTFAHLHRMSARF
HTKRETGAIVRDVQKGADGIGFLLGVALFTIVPTAFEIATIVAIMVHNYAREFMIAIAAT
FVCYAAYTFVFTRRRVAFQRAVNALEAQSDGRLVDSLLNYDTVKYFATEDTETKRLSVVL
DKWVHARTANQRALTALHVGQSAVIAFGIGAIMLLAAQHVVAGSMTVGDLILVNAYIIQI
CMPLNTLGFVFRETNDAMVNVERMFEILAARGRVGEDIDEPAAKPLVVSAGQISFEHVDF
GYDPARQILRDVDFHAYPGKTLAIVGGSGSGKSTLVKLLFRLYQPNSGRILIDGQDIGHV
TQKSLREAIGIVPQDTVLFNETIAYNIAYGRPSATRADVVRAARAAQLDEFIERLPDHYD
TRVGERGVRLSGGERQRIAIARAILKDPRIIVFDEATSALDTRSERAIQTELTRLAQGRT
SIVIAHRLSTVVDADWILVMEHGRVVEQGTHRELLTREGVYAKMWSLQWQQGELEHAQRK
LTAQSVSLAALMAGVIDALHDEIAAQRVTLYPQISDNDLRVTGDPSVLQPLIAELCRNEI
VHARPGQRIELRVERHNNQVWVTVLGMGEKPAELSQAAARYMEEALAAAGGSFTLMTLNG
RLAYVAMLPLRPVADADSGAGSAAVPLTSEVDGAAPLEGLFVMAIDDQEDALDALEAVLV
SSGARVRTASSGKEALDWFAATPTTQWPHALLCDIVLADEDGYDVLRRLRRLEADRQLPL
QDRVPAIAITGYAEGEDRMRAQMAGFQAHLSKPVAPEKLIGEIRNLAMASARTGV