Protein Info for H281DRAFT_03246 in Paraburkholderia bryophila 376MFSha3.1

Annotation: iron complex outermembrane recepter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 814 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details PF07715: Plug" amino acids 102 to 212 (111 residues), 58.7 bits, see alignment E=7.8e-20 PF00593: TonB_dep_Rec" amino acids 351 to 790 (440 residues), 184.2 bits, see alignment E=8.3e-58

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 89% identity to bug:BC1001_4075)

Predicted SEED Role

"Outer membrane receptor proteins, mostly Fe transport" in subsystem Hemin transport system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (814 amino acids)

>H281DRAFT_03246 iron complex outermembrane recepter protein (Paraburkholderia bryophila 376MFSha3.1)
MFIFALRRLPARVRFERGAGVATRAFHTFRGFTFARLHCASFASYLHAFFPAAVTGLAGF
AALSASPARADTVSADTTLPTVSVSANSSADQSAATRAVDPDLPATVETVTRDQFSNWNV
VNTEDVLKYMPNLAVRKRFIGDLNSIIAVRGTSNTQSARGLVYADGLLLSNLLGNSFSFP
PRWSMVSPDEIQRVDVIYGPYSALYPGNSLGATVLISTRMPKKFEAEADVKAFTQHFSLY
GVNRNFNGSEASASLGDRIGKFSYSLGVNHLENTSQPLQFATLAKSGTPARAGDTPVTGA
YFYNNQTNTPTAILGINGEGIEHTVQDQFKLKMQYDFTPTLQGGFTLGYWHQTYNSQTSS
FLRDANGNPVYSGKVAIDGYEYTVPAAAFAPSLGHSENWLYGVSLKTRHATGWNGEAIAS
YYDVGNSVARLANSGAPGNGAGTVTFGDGTGWKTLDLRTTYTPESTQAGLTNHALSFGYH
YDNYFLDNESYSTPNWRDGAAATFANSFAGKTQTQALYAQDAWRFLPRWKFVYGIRYEDW
HAYDGSQSLSGTTIAPGDANQRHFSPKASLSFDVSDDLTLRASIGRAYRFPTVSELFQGQ
INGSSIVNNNPNLKPEDDLSKELTAEWAHWNGIFRFSLFQDDVKNTIFSQTDTTVIPNVT
NFQNIGKVRSRGVETSYAGENVFMRGLDLLASVAYTQSKILANAQNPASVGKYFYRIPLW
RANIAATYHFDERSALTLAARYSGRQYNTLTNTDTNPDVFGGTSSYAVADAKFTFKPTKL
SEVGIGVDNIFDERYYVYHPYPGRTFYVEAKLRM